Jared Bischof
Jared Bischof
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The MG-RAST metagenomics database and portal in 2015
A Wilke, J Bischof, W Gerlach, E Glass, T Harrison, KP Keegan, T Paczian, ...
Nucleic acids research 44 (D1), D590-D594, 2016
1602016
Identification of differentially expressed microRNAs in osteosarcoma
RR Lulla, FF Costa, JM Bischof, PM Chou, MF Bonaldo, EF Vanin, ...
Sarcoma 2011, 2011
1442011
Identification of microRNAs as potential prognostic markers in ependymoma
FF Costa, JM Bischof, EF Vanin, RR Lulla, M Wang, ST Sredni, V Rajaram, ...
PloS one 6 (10), e25114, 2011
1202011
Skyport-container-based execution environment management for multi-cloud scientific workflows
W Gerlach, W Tang, K Keegan, T Harrison, A Wilke, J Bischof, M D'Souza, ...
2014 5th International Workshop on Data-Intensive Computing in the Clouds, 25-32, 2014
1072014
Folic acid remodels chromatin on Hes1 and Neurog2 promoters during caudal neural tube development
S Ichi, FF Costa, JM Bischof, H Nakazaki, YW Shen, V Boshnjaku, ...
Journal of Biological Chemistry 285 (47), 36922-36932, 2010
882010
Genome‐wide identification of pseudogenes capable of disease‐causing gene conversion
JM Bischof, AP Chiang, TE Scheetz, EM Stone, TL Casavant, VC Sheffield, ...
Human mutation 27 (6), 545-552, 2006
882006
Epigenetically reprogramming metastatic tumor cells with an embryonic microenvironment
FF Costa, EA Seftor, JM Bischof, DA Kirschmann, L Strizzi, K Arndt, ...
Epigenomics 1 (2), 387-398, 2009
802009
A RESTful API for accessing microbial community data for MG-RAST
A Wilke, J Bischof, T Harrison, T Brettin, M D'Souza, W Gerlach, ...
PLoS computational biology 11 (1), e1004008, 2015
662015
The commonality of plasticity underlying multipotent tumor cells and embryonic stem cells
LM Postovit, FF Costa, JM Bischof, EA Seftor, B Wen, REB Seftor, ...
Journal of cellular biochemistry 101 (4), 908-917, 2007
652007
Global demethylation of rat chondrosarcoma cells after treatment with 5-aza-2′-deoxycytidine results in increased tumorigenicity
CA Hamm, H Xie, FF Costa, EF Vanin, EA Seftor, ST Sredni, J Bischof, ...
PLoS One 4 (12), e8340, 2009
572009
Epigenetic reprogramming as a key contributor to melanocyte malignant transformation
F Molognoni, AT Cruz, FM Meliso, AS Morais, CF Souza, P Xander, ...
Epigenetics 6 (4), 450-464, 2011
412011
Upregulation of mir-221 and mir-222 in atypical teratoid/rhabdoid tumors: potential therapeutic targets
ST Sredni, M de Fátima Bonaldo, FF Costa, CC Huang, CA Hamm, ...
Child's Nervous System 26 (3), 279-283, 2010
382010
Transcriptional profiling of polycythemia vera identifies gene expression patterns both dependent and independent from the action of JAK2V617F
W Berkofsky-Fessler, M Buzzai, MKH Kim, S Fruchtman, V Najfeld, DJ Min, ...
Clinical cancer research 16 (17), 4339-4352, 2010
362010
Microenvironment alters epigenetic and gene expression profiles in Swarm rat chondrosarcoma tumors
CA Hamm, JW Stevens, H Xie, EF Vanin, JA Morcuende, H Abdulkawy, ...
BMC cancer 10 (1), 1-16, 2010
342010
Parallel creation of non-redundant gene indices from partial mRNA transcripts
N Trivedi, J Bischof, S Davis, K Pedretti, TE Scheetz, TA Braun, ...
Future Generation Computer Systems 18 (6), 863-870, 2002
322002
High-throughput gene discovery in the rat
TE Scheetz, JJ Laffin, B Berger, S Holte, SA Baumes, R Brown, S Chang, ...
Genome research 14 (4), 733-741, 2004
272004
Expression of miR-18a and miR-210 in normal breast tissue as candidate biomarkers of breast cancer risk
A Shidfar, FF Costa, D Scholtens, JM Bischof, ME Sullivan, DZ Ivancic, ...
Cancer Prevention Research 10 (1), 89-97, 2017
222017
A metagenomics portal for a democratized sequencing world
A Wilke, EM Glass, D Bartels, J Bischof, D Braithwaite, M D’Souza, ...
Methods in enzymology 531, 487-523, 2013
222013
Multiple mechanisms influence regulation of the cystic fibrosis transmembrane conductance regulator gene promoter
MA Lewandowska, FF Costa, JM Bischof, SH Williams, MB Soares, ...
American journal of respiratory cell and molecular biology 43 (3), 334-341, 2010
222010
A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function
JM Bischof, CJ Ott, SH Leir, N Gosalia, L Song, D London, TS Furey, ...
Thorax 67 (5), 385-391, 2012
202012
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