Hannes Bretschneider

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Brendan FreyFounder & CEO, Deep Genomics; Co-Founder, Vector Institute; Professor, University of TorontoVerified email at psi.toronto.edu
Hui Yuan XiongRenaissance TechnologiesVerified email at psi.toronto.edu
Babak AlipanahiExai BioVerified email at exai.bio
Benjamin J. BlencoweProfessor, University of TorontoVerified email at utoronto.ca
Raphael GottardoLausanne University Hospital and University of LausanneVerified email at chuv.ch
Greg FinakCTO, Ozette TechnologiesVerified email at ozette.ai
Ryan BrinkmanBritish Columbia Cancer AgencyVerified email at bccrc.ca
Richard H. ScheuermannJ. Craig Venter InstituteVerified email at jcvi.org
Holger HoosRWTH Aachen University, Germany • Leiden University, Netherlands • University of British ColumbiaVerified email at cs.rwth-aachen.de
Nima AghaeepourStanford UniversityVerified email at stanford.edu

Hannes Bretschneider

Donnelly Centre and Department of Molecular Genetics, University of Toronto

Verified email at utoronto.ca

Machine Learning Computational Biology Information Visualization Computational Linguistics


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The human splicing code reveals new insights into the genetic determinants of disease HY Xiong, B Alipanahi, LJ Lee, H Bretschneider, D Merico, RKC Yuen, ... Science 347 (6218), 1254806, 2015	1389	2015
Critical Assessment of Automated Flow-Cytometry Analysis Techniques N Aghaeepour, G Finak, the FlowCAP Consortium, the Dream Consortium, ... Nature Methods 10, 228–238, 2013	642	2013
Systems and methods for classifying, prioritizing and interpreting genetic variants and therapies using a deep neural network B Frey, MKK Leung, AT Delong, HY Xiong, B Alipanahi, LJ Lee, ... US Patent 10,185,803, 2019	95	2019
COSSMO: predicting competitive alternative splice site selection using deep learning H Bretschneider, S Gandhi, AG Deshwar, K Zuberi, BJ Frey Bioinformatics 34 (13), i429-i437, 2018	54	2018
Probabilistic estimation of short sequence expression using RNA-Seq data and the “positional bootstrap” HY Xiong, LJ Lee, H Bretschneider, J Gao, N Jojic, BJ Frey bioRxiv, 046474, 2016	4	2016
Systems and Methods for Determining Effects of Genetic Variation of Splice Site Selection B Frey, H Bretschneider US Patent App. 16/571,335, 2020	1	2020
Systems and methods for classifying, prioritizing and interpreting genetic variants and therapies using a deep neural network B Frey, MKK Leung, AT Delong, HY Xiong, B Alipanahi, LJ Lee, ... US Patent 11,887,696, 2024		2024
Systems and methods for classifying, prioritizing and interpreting genetic variants and therapies using a deep neural network B Frey, MKK Leung, AT Delong, HY Xiong, B Alipanahi, LJ Lee, ... US Patent App. 17/369,499, 2021		2021
Alternative Splice Site Prediction with Deep Learning H Bretschneider University of Toronto (Canada), 2019		2019
Automatic determination of the number of mixture components in Flow Cytometry with Variational Bayes H Bretschneider, A Roth

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