フォロー
Carlos Lopez
Carlos Lopez
その他の名前Carlos Federico Lopez, Carlos F. Lopez
Lead, Multiscale Modeling and Principal Scientist
確認したメール アドレス: altoslabs.com
タイトル
引用先
引用先
Coarse grain models and the computer simulation of soft materials
SO Nielsen, CF Lopez, G Srinivas, ML Klein
Journal of Physics: Condensed Matter 16 (15), R481, 2004
6362004
Understanding nature's design for a nanosyringe
CF Lopez, SO Nielsen, PB Moore, ML Klein
Proceedings of the National Academy of Sciences 101 (13), 4431-4434, 2004
3732004
Hydrophobicity of protein surfaces: Separating geometry from chemistry
N Giovambattista, CF Lopez, PJ Rossky, PG Debenedetti
Proceedings of the National Academy of Sciences 105 (7), 2274-2279, 2008
2962008
Programming biological models in Python using PySB
CF Lopez, JL Muhlich, JA Bachman, PK Sorger
Molecular systems biology 9 (1), 646, 2013
2822013
Hydrogen bonding structure and dynamics of water at the dimyristoylphosphatidylcholine lipid bilayer surface from a molecular dynamics simulation
CF Lopez, SO Nielsen, ML Klein, PB Moore
The Journal of Physical Chemistry B 108 (21), 6603-6610, 2004
1992004
Dynamical properties of a hydrated lipid bilayer from a multinanosecond molecular dynamics simulation
PB Moore, CF Lopez, ML Klein
Biophysical journal 81 (5), 2484-2494, 2001
1982001
Rule‐based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems
LA Chylek, LA Harris, CS Tung, JR Faeder, CF Lopez, WS Hlavacek
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 6 (1), 13-36, 2014
1682014
A coarse grain model for n-alkanes parameterized from surface tension data
SO Nielsen, CF Lopez, G Srinivas, ML Klein
The Journal of chemical physics 119 (14), 7043-7049, 2003
1612003
Mechanistic elements of protein cold denaturation
CF Lopez, RK Darst, PJ Rossky
The Journal of Physical Chemistry B 112 (19), 5961-5967, 2008
1462008
Computer simulation studies of biomembranes using a coarse grain model
CF Lopez, PB Moore, JC Shelley, MY Shelley, ML Klein
Computer Physics Communications 147 (1-2), 1-6, 2002
1292002
Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers
DJ Wooten, SM Groves, DR Tyson, Q Liu, JS Lim, R Albert, CF Lopez, ...
PLoS computational biology 15 (10), e1007343, 2019
1152019
An unbiased metric of antiproliferative drug effect in vitro
LA Harris, PL Frick, SP Garbett, KN Hardeman, BB Paudel, CF Lopez, ...
Nature methods 13 (6), 497-500, 2016
1142016
PyDREAM: high-dimensional parameter inference for biological models in python
EM Shockley, JA Vrugt, CF Lopez
Bioinformatics 34 (4), 695-697, 2018
852018
Probing membrane insertion activity of antimicrobial polymers via coarse-grain molecular dynamics
CF Lopez, SO Nielsen, G Srinivas, WF DeGrado, ML Klein
Journal of chemical theory and computation 2 (3), 649-655, 2006
852006
MuSyC is a consensus framework that unifies multi-drug synergy metrics for combinatorial drug discovery
DJ Wooten, CT Meyer, ALR Lubbock, V Quaranta, CF Lopez
Nature communications 12 (1), 4607, 2021
78*2021
Structure and dynamics of model pore insertion into a membrane
CF Lopez, SO Nielsen, B Ensing, PB Moore, ML Klein
Biophysical journal 88 (5), 3083-3094, 2005
772005
Charting the fragmented landscape of drug synergy
CT Meyer, DJ Wooten, CF Lopez, V Quaranta
Trends in pharmacological sciences 41 (4), 266-280, 2020
752020
Molecular dynamics investigations of lipid Langmuir monolayers using a coarse-grain model
SO Nielsen, CF Lopez, PB Moore, JC Shelley, ML Klein
The Journal of Physical Chemistry B 107 (50), 13911-13917, 2003
722003
Transmembrane peptide-induced lipid sorting and mechanism of Lα-to-inverted phase transition using coarse-grain molecular dynamics
SO Nielsen, CF Lopez, I Ivanov, PB Moore, JC Shelley, ML Klein
Biophysical journal 87 (4), 2107-2115, 2004
672004
Molecular dynamics investigation of membrane-bound bundles of the channel-forming transmembrane domain of viral protein U from the human immunodeficiency virus HIV-1
CF Lopez, M Montal, JK Blasie, ML Klein, PB Moore
Biophysical journal 83 (3), 1259-1267, 2002
652002
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