フォロー
Carlos Lopez
Carlos Lopez
その他の名前Carlos Federico Lopez, Carlos F. Lopez
Lead, Multiscale Modeling and Principal Scientist
確認したメール アドレス: altoslabs.com
タイトル
引用先
引用先
Coarse grain models and the computer simulation of soft materials
SO Nielsen, CF Lopez, G Srinivas, ML Klein
Journal of Physics: Condensed Matter 16 (15), R481, 2004
6172004
Understanding nature's design for a nanosyringe
CF Lopez, SO Nielsen, PB Moore, ML Klein
Proceedings of the National Academy of Sciences 101 (13), 4431-4434, 2004
3702004
Hydrophobicity of protein surfaces: Separating geometry from chemistry
N Giovambattista, CF Lopez, PJ Rossky, PG Debenedetti
Proceedings of the National Academy of Sciences 105 (7), 2274-2279, 2008
2902008
Programming biological models in Python using PySB
CF Lopez, JL Muhlich, JA Bachman, PK Sorger
Molecular systems biology 9 (1), 646, 2013
2692013
Hydrogen bonding structure and dynamics of water at the dimyristoylphosphatidylcholine lipid bilayer surface from a molecular dynamics simulation
CF Lopez, SO Nielsen, ML Klein, PB Moore
The Journal of Physical Chemistry B 108 (21), 6603-6610, 2004
1912004
Dynamical properties of a hydrated lipid bilayer from a multinanosecond molecular dynamics simulation
PB Moore, CF Lopez, ML Klein
Biophysical journal 81 (5), 2484-2494, 2001
1882001
Rule‐based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems
LA Chylek, LA Harris, CS Tung, JR Faeder, CF Lopez, WS Hlavacek
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 6 (1), 13-36, 2014
1572014
A coarse grain model for n-alkanes parameterized from surface tension data
SO Nielsen, CF Lopez, G Srinivas, ML Klein
The Journal of chemical physics 119 (14), 7043-7049, 2003
1542003
Mechanistic elements of protein cold denaturation
CF Lopez, RK Darst, PJ Rossky
The Journal of Physical Chemistry B 112 (19), 5961-5967, 2008
1362008
Computer simulation studies of biomembranes using a coarse grain model
CF Lopez, PB Moore, JC Shelley, MY Shelley, ML Klein
Computer Physics Communications 147 (1-2), 1-6, 2002
1252002
An unbiased metric of antiproliferative drug effect in vitro
LA Harris, PL Frick, SP Garbett, KN Hardeman, BB Paudel, CF Lopez, ...
Nature methods 13 (6), 497-500, 2016
1092016
Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers
DJ Wooten, SM Groves, DR Tyson, Q Liu, JS Lim, R Albert, CF Lopez, ...
PLoS computational biology 15 (10), e1007343, 2019
852019
Probing membrane insertion activity of antimicrobial polymers via coarse-grain molecular dynamics
CF Lopez, SO Nielsen, G Srinivas, WF DeGrado, ML Klein
Journal of chemical theory and computation 2 (3), 649-655, 2006
822006
PyDREAM: high-dimensional parameter inference for biological models in python
EM Shockley, JA Vrugt, CF Lopez
Bioinformatics 34 (4), 695-697, 2018
782018
Structure and dynamics of model pore insertion into a membrane
CF Lopez, SO Nielsen, B Ensing, PB Moore, ML Klein
Biophysical Journal 88 (5), 3083-3094, 2005
742005
Molecular dynamics investigations of lipid Langmuir monolayers using a coarse-grain model
SO Nielsen, CF Lopez, PB Moore, JC Shelley, ML Klein
The Journal of Physical Chemistry B 107 (50), 13911-13917, 2003
722003
Transmembrane peptide-induced lipid sorting and mechanism of Lα-to-inverted phase transition using coarse-grain molecular dynamics
SO Nielsen, CF Lopez, I Ivanov, PB Moore, JC Shelley, ML Klein
Biophysical journal 87 (4), 2107-2115, 2004
652004
Molecular dynamics investigation of membrane-bound bundles of the channel-forming transmembrane domain of viral protein U from the human immunodeficiency virus HIV-1
CF Lopez, M Montal, JK Blasie, ML Klein, PB Moore
Biophysical journal 83 (3), 1259-1267, 2002
642002
Charting the fragmented landscape of drug synergy
CT Meyer, DJ Wooten, CF Lopez, V Quaranta
Trends in pharmacological sciences 41 (4), 266-280, 2020
622020
MuSyC is a consensus framework that unifies multi-drug synergy metrics for combinatorial drug discovery
DJ Wooten, CT Meyer, ALR Lubbock, V Quaranta, CF Lopez
Nature communications 12 (1), 4607, 2021
60*2021
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論文 1–20