Dimitra Karagkouni, PhD
Dimitra Karagkouni, PhD
PhD in Bioinformatics, University of Thessaly & Hellenic Pasteur Institute
Verified email at uth.gr
Title
Cited by
Cited by
Year
DIANA-miRPath v3. 0: deciphering microRNA function with experimental support
IS Vlachos, K Zagganas, MD Paraskevopoulou, G Georgakilas, ...
Nucleic acids research 43 (W1), W460-W466, 2015
9572015
DIANA-TarBase v7. 0: indexing more than half a million experimentally supported miRNA: mRNA interactions
IS Vlachos, MD Paraskevopoulou, D Karagkouni, G Georgakilas, ...
Nucleic acids research 43 (D1), D153-D159, 2015
6312015
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions
D Karagkouni, MD Paraskevopoulou, S Chatzopoulos, IS Vlachos, ...
Nucleic acids research 46 (D1), D239-D245, 2018
3372018
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts
MD Paraskevopoulou, IS Vlachos, D Karagkouni, G Georgakilas, ...
Nucleic acids research 44 (D1), D231-D238, 2016
3372016
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species
A Papanicolaou, MF Schetelig, P Arensburger, PW Atkinson, JB Benoit, ...
Genome biology 17 (1), 1-31, 2016
1112016
RNAcentral: a hub of information for non-coding RNA sequences
Nucleic acids research 47 (D1), D221-D229, 2019
832019
DIANA-mirExTra v2. 0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data
IS Vlachos, T Vergoulis, MD Paraskevopoulou, F Lykokanellos, ...
Nucleic acids research 44 (W1), W128-W134, 2016
272016
DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts
D Karagkouni, MD Paraskevopoulou, S Tastsoglou, G Skoufos, ...
Nucleic acids research 48 (D1), D101-D110, 2020
252020
microCLIP super learning framework uncovers functional transcriptome-wide miRNA interactions
MD Paraskevopoulou, D Karagkouni, IS Vlachos, S Tastsoglou, ...
Nature communications 9 (1), 1-16, 2018
132018
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases
Nucleic Acids Research 49 (D1), D212-D220, 2021
82021
Computational Challenges and-omics Approaches for the Identification of microRNAs and Targets
IS Vlachos, G Georgakilas, S Tastsoglou, MD Paraskevopoulou, ...
Essentials of Noncoding RNA in Neuroscience, 39-59, 2017
12017
A miR-124-mediated post-transcriptional mechanism controlling the cell fate switch of astrocytes to induced-neurons
E Papadimitriou, PN Koutsoudaki, T Karamitros, D Karagkouni, ...
bioRxiv, 2020.06. 01.127126, 2021
2021
DIANA-mAP: Analyzing miRNA from Raw NGS Data to Quantification
A Alexiou, D Zisis, I Kavakiotis, M Miliotis, A Koussounadis, D Karagkouni, ...
Genes 12 (1), 46, 2021
2021
Reporting on the role of miRNAs and affected pathways on the molecular backbone of ovarian insufficiency: A systematic review and critical analysis mapping of future research
A Rapani, D Nikiforaki, D Karagkouni, K Sfakianoudis, P Tsioulou, ...
Frontiers in cell and developmental biology 8, 2020
2020
DIANA-mAP: Analyzing miRNA from Raw NGS Data to Quantification. Genes 2021, 12, 46
A Alexiou, D Zisis, I Kavakiotis, M Miliotis, A Koussounadis, D Karagkouni, ...
s Note: MDPI stays neu-tral with regard to jurisdictional clai-ms in …, 2020
2020
Cooperative action of miR-124 and ISX9 in instructing direct reprogramming of mouse astrocytes to induced-neurons in vitro and in vivo
E Papadimitriou, PN Koutsoudaki, T Karamitros, D Karagkouni, ...
bioRxiv, 2020
2020
Computational Analysis of non-coding RNA Regulatory Functions on a Transcriptome-wide Scale
D Karagkouni
University of Thessaly, Volos, Greece, 2019
2019
Erratum to: The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly …
A Papanicolaou, MF Schetelig, P Arensburger, PW Atkinson, JB Benoit, ...
Genome biology 18 (1), 1-2, 2017
2017
COMPUTATIONAL CHALLENGES AND-OMICS APPROACHES FOR THE IDENTIFICATION
S Tastsoglou, MD Paraskevopoulou, D Karagkouni, AG Hatzigeorgiou
Essentials of Noncoding RNA in Neuroscience: Ontogenetics, Plasticity of the …, 2017
2017
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