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Naoki Nariai
Naoki Nariai
Exact Sciences
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Cited by
Cited by
Year
Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals
M Nagasaki, J Yasuda, F Katsuoka, N Nariai, K Kojima, Y Kawai, ...
Nature communications 6 (1), 8018, 2015
4242015
Large-scale profiling reveals the influence of genetic variation on gene expression in human induced pluripotent stem cells
C DeBoever, H Li, D Jakubosky, P Benaglio, J Reyna, KM Olson, ...
Cell stem cell 20 (4), 533-546. e7, 2017
1742017
iPSCORE: a resource of 222 iPSC lines enabling functional characterization of genetic variation across a variety of cell types
AD Panopoulos, M D'Antonio, P Benaglio, R Williams, SI Hashem, ...
Stem cell reports 8 (4), 1086-1100, 2017
1592017
Japonica array: improved genotype imputation by designing a population-specific SNP array with 1070 Japanese individuals
Y Kawai, T Mimori, K Kojima, N Nariai, I Danjoh, R Saito, J Yasuda, ...
Journal of human genetics 60 (10), 581-587, 2015
1422015
Probabilistic protein function prediction from heterogeneous genome-wide data
N Nariai, ED Kolaczyk, S Kasif
Plos one 2 (3), e337, 2007
1322007
Using protein-protein interactions for refining gene networks estimated from microarray data by Bayesian networks
N Nariai, S Kim, S Imoto, S Miyano
Biocomputing 2004, 336-347, 2003
1192003
iJGVD: an integrative Japanese genome variation database based on whole-genome sequencing
Y Yamaguchi-Kabata, N Nariai, Y Kawai, Y Sato, K Kojima, M Tateno, ...
Human genome variation 2 (1), 1-4, 2015
1122015
Systematic analysis of binding of transcription factors to noncoding variants
J Yan, Y Qiu, AM Ribeiro dos Santos, Y Yin, YE Li, N Vinckier, N Nariai, ...
Nature 591 (7848), 147-151, 2021
952021
Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk
WW Greenwald, J Chiou, J Yan, Y Qiu, N Dai, A Wang, N Nariai, ...
Nature communications 10 (1), 2078, 2019
922019
HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data
N Nariai, K Kojima, S Saito, T Mimori, Y Sato, Y Kawai, ...
BMC genomics 16, 1-6, 2015
922015
Transposon mutagenesis identifies genes that transform neural stem cells into glioma-initiating cells
H Koso, H Takeda, CCK Yew, JM Ward, N Nariai, K Ueno, M Nagasaki, ...
Proceedings of the National Academy of Sciences 109 (44), E2998-E3007, 2012
772012
Estimating gene regulatory networks and protein–protein interactions of Saccharomyces cerevisiae from multiple genome-wide data
N Nariai, Y Tamada, S Imoto, S Miyano
Bioinformatics 21 (suppl_2), ii206-ii212, 2005
612005
TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads
N Nariai, K Kojima, T Mimori, Y Sato, Y Kawai, Y Yamaguchi-Kabata, ...
BMC genomics 15, 1-9, 2014
512014
Integration of relational and hierarchical network information for protein function prediction
X Jiang, N Nariai, M Steffen, S Kasif, ED Kolaczyk
BMC Bioinformatics 9 (1), 350, 2008
482008
TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference
N Nariai, O Hirose, K Kojima, M Nagasaki
Bioinformatics 29 (18), 2292-2299, 2013
452013
Wnt3a stimulates maturation of impaired neutrophils developed from severe congenital neutropenia patient-derived pluripotent stem cells
T Hiramoto, Y Ebihara, Y Mizoguchi, K Nakamura, K Yamaguchi, K Ueno, ...
Proceedings of the National Academy of Sciences 110 (8), 3023-3028, 2013
432013
Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C peak and other chromatin interaction data
WW Greenwald, H Li, EN Smith, P Benaglio, N Nariai, KA Frazer
BMC bioinformatics 18, 1-6, 2017
382017
iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data
T Mimori, N Nariai, K Kojima, M Takahashi, A Ono, Y Sato, ...
BMC systems biology 7, 1-8, 2013
382013
Profiling of microRNA in human and mouse ES and iPS cells reveals overlapping but distinct microRNA expression patterns
SRA Razak, K Ueno, N Takayama, N Nariai, M Nagasaki, R Saito, H Koso, ...
PloS one 8 (9), e73532, 2013
382013
Systematic genetic analysis of the MHC region reveals mechanistic underpinnings of HLA type associations with disease
M D'Antonio, J Reyna, D Jakubosky, MKR Donovan, MJ Bonder, H Matsui, ...
Elife 8, e48476, 2019
352019
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