| The genomic substrate for adaptive radiation in African cichlid fish D Brawand, CE Wagner, YI Li, M Malinsky, I Keller, S Fan, O Simakov, ... Nature 513 (7518), 375-381, 2014 | 692 | 2014 |
| Phylogenetic relationships among cetartiodactyls based on insertions of short and long interpersed elements: hippopotamuses are the closest extant relatives of whales M Nikaido, AP Rooney, N Okada Proceedings of the National Academy of Sciences 96 (18), 10261-10266, 1999 | 435 | 1999 |
| Retroposon analysis of major cetacean lineages: the monophyly of toothed whales and the paraphyly of river dolphins M Nikaido, F Matsuno, H Hamilton, RL Brownell, Y Cao, W Ding, ... Proceedings of the National Academy of Sciences 98 (13), 7384-7389, 2001 | 246 | 2001 |
| Mitochondrial phylogenetics and evolution of mysticete whales T Sasaki, M Nikaido, H Hamilton, M Goto, H Kato, N Kanda, LA Pastene, ... Systematic biology 54 (1), 77-90, 2005 | 171 | 2005 |
| Maximum likelihood analysis of the complete mitochondrial genomes of eutherians and a reevaluation of the phylogeny of bats and insectivores M Nikaido, K Kawai, Y Cao, M Harada, S Tomita, N Okada, M Hasegawa Journal of Molecular Evolution 53 (4-5), 508-516, 2001 | 144 | 2001 |
| Interordinal relationships and timescale of eutherian evolution as inferred from mitochondrial genome data Y Cao, M Fujiwara, M Nikaido, N Okada, M Hasegawa Gene 259 (1-2), 149-158, 2000 | 130 | 2000 |
| Genealogy of families of SINEs in cetaceans and artiodactyls: the presence of a huge superfamily of tRNA (Glu)-derived families of SINEs. M Shimamura, H Abe, M Nikaido, K Ohshima, N Okada Molecular biology and evolution 16 (8), 1046-1060, 1999 | 100 | 1999 |
| A retroposon analysis of Afrotherian phylogeny H Nishihara, Y Satta, M Nikaido, JGM Thewissen, MJ Stanhope, N Okada Molecular biology and evolution 22 (9), 1823-1833, 2005 | 95 | 2005 |
| Balaenoptera omurai is a newly discovered baleen whale that represents an ancient evolutionary lineage T Sasaki, M Nikaido, S Wada, TK Yamada, Y Cao, M Hasegawa, N Okada Molecular Phylogenetics and Evolution 41 (1), 40-52, 2006 | 93 | 2006 |
| Extensive mitochondrial gene arrangements in coleoid Cephalopoda and their phylogenetic implications T Akasaki, M Nikaido, K Tsuchiya, S Segawa, M Hasegawa, N Okada Molecular phylogenetics and evolution 38 (3), 648-658, 2006 | 93 | 2006 |
| Ancient SINEs from African endemic mammals M Nikaido, H Nishihara, Y Hukumoto, N Okada Molecular Biology and Evolution 20 (4), 522-527, 2003 | 86 | 2003 |
| Environmental DNA enables detection of terrestrial mammals from forest pond water M Ushio, H Fukuda, T Inoue, K Makoto, O Kishida, K Sato, K Murata, ... Molecular Ecology Resources 17 (6), e63-e75, 2017 | 83 | 2017 |
| Monophyletic origin of the order Chiroptera and its phylogenetic position among Mammalia, as inferred from the complete sequence of the mitochondrial DNA of a Japanese megabat … M Nikaido, M Harada, Y Cao, M Hasegawa, N Okada Journal of Molecular Evolution 51 (4), 318-328, 2000 | 81 | 2000 |
| The status of the Japanese and East Asian bats of the genus Myotis (Vespertilionidae) based on mitochondrial sequences K Kawai, M Nikaido, M Harada, S Matsumura, LK Lin, Y Wu, M Hasegawa, ... Molecular Phylogenetics and Evolution 28 (2), 297-307, 2003 | 80 | 2003 |
| Coelacanth genomes reveal signatures for evolutionary transition from water to land M Nikaido, H Noguchi, H Nishihara, A Toyoda, Y Suzuki, R Kajitani, ... Genome research 23 (10), 1740-1748, 2013 | 78 | 2013 |
| Intra-and interfamily relationships of Vespertilionidae inferred by various molecular markers including SINE insertion data K Kawai, M Nikaido, M Harada, S Matsumura, LK Lin, Y Wu, M Hasegawa, ... Journal of Molecular Evolution 55 (3), 284-301, 2002 | 76 | 2002 |
| Baleen whale phylogeny and a past extensive radiation event revealed by SINE insertion analysis M Nikaido, H Hamilton, H Makino, T Sasaki, K Takahashi, M Goto, ... Molecular Biology and Evolution 23 (5), 866-873, 2006 | 67 | 2006 |
| Afrotherian phylogeny as inferred from complete mitochondrial genomes Y Murata, M Nikaido, T Sasaki, Y Cao, Y Fukumoto, M Hasegawa, ... Molecular phylogenetics and evolution 28 (2), 253-260, 2003 | 67 | 2003 |
| Molecular phylogenetic study on the origin and evolution of Mustelidae T Yonezawa, M Nikaido, N Kohno, Y Fukumoto, N Okada, M Hasegawa Gene 396 (1), 1-12, 2007 | 62 | 2007 |
| First application of the SINE (short interspersed repetitive element) method to infer phylogenetic relationships in reptiles: an example from the turtle superfamily Testudinoidea T Sasaki, K Takahashi, M Nikaido, S Miura, Y Yasukawa, N Okada Molecular Biology and Evolution 21 (4), 705-715, 2004 | 61 | 2004 |
