フォロー
Jerome Samir
Jerome Samir
確認したメール アドレス: kirby.unsw.edu.au
タイトル
引用先
引用先
VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium
DV Bagaev, RMA Vroomans, J Samir, U Stervbo, C Rius, G Dolton, ...
Nucleic Acids Research 48 (D1), D1057-D1062, 2020
3052020
B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle
S Rizzetto, DNP Koppstein, J Samir, M Singh, JH Reed, CH Cai, AR Lloyd, ...
Bioinformatics 34 (16), 2846-2847, 2018
992018
VDJdb in the pandemic era: a compendium of T cell receptors specific for SARS-CoV-2
M Goncharov, D Bagaev, D Shcherbinin, I Zvyagin, D Bolotin, PG Thomas, ...
Nature methods 19 (9), 1017-1019, 2022
532022
Exploring and analysing single cell multi-omics data with VDJView
J Samir, S Rizzetto, M Gupta, F Luciani
BMC medical genomics 13, 1-9, 2020
182020
Natural killer cell receptors regulate responses of HLA-E–restricted T cells
LC Sullivan, THO Nguyen, CM Harpur, S Stankovic, AR Kanagarajah, ...
Science immunology 6 (58), eabe9057, 2021
172021
Identification of human progenitors of exhausted CD8+ T cells associated with elevated IFN-γ response in early phase of viral infection
C Cai, J Samir, MR Pirozyan, TN Adikari, M Gupta, P Leung, B Hughes, ...
Nature communications 13 (1), 7543, 2022
82022
Human CD8 T‐stem cell memory subsets phenotypic and functional characterization are defined by expression of CD122 or CXCR3
Y Zhao, C Cai, J Samir, JL Palgen, E Keoshkerian, H Li, RA Bull, ...
European Journal of Immunology 51 (7), 1732-1747, 2021
82021
Single-cell transcriptome analysis of T cells
W Van Der Byl, S Rizzetto, J Samir, C Cai, AA Eltahla, F Luciani
In Vitro Differentiation of T-Cells: Methods and Protocols, 155-205, 2019
42019
Global and cell type-specific immunological hallmarks of severe dengue progression identified via a systems immunology approach
L Ghita, Z Yao, Y Xie, V Duran, HB Cagirici, J Samir, I Osman, ...
Nature Immunology 24 (12), 2150-2163, 2023
22023
CAR+ and CAR T cells share a differentiation trajectory into an NK-like subset after CD19 CAR T cell infusion in patients with B cell malignancies
RHY Louie, C Cai, J Samir, M Singh, IW Deveson, JM Ferguson, TG Amos, ...
Nature Communications 14 (1), 7767, 2023
12023
Global and cell type-specific immunological hallmarks of severe dengue progression
L Ghita, Z Yao, Y Xie, V Duran, HB Cagirici, J Samir, I Osman, ...
Biorxiv, 2022.12. 11.519930, 2022
12022
Harnessing single cell multi-omics data to identify predictors of clinical outcome in CD19 CAR T cell therapy
RY Louie, J Samir, C Cai, H McGuire, T Amos, J Fergsuson, I Deveson, ...
Cancer Research 84 (6_Supplement), 882-882, 2024
2024
Expanded T cell clones with lymphoma driver somatic mutations in refractory celiac disease
M Singh, RHY Louie, J Samir, MA Field, C Milthorpe, T Aldiriki, J Mackie, ...
medRxiv, 2024.03. 17.24304320, 2024
2024
Newborn and child-like molecular signatures in older adults stem from TCR shifts across human lifespan
CE van de Sandt, THO Nguyen, NA Gherardin, JC Crawford, J Samir, ...
Nature immunology 24 (11), 1890-1907, 2023
2023
The development of bioinformatics workflows to explore single-cell multi-omics data from T and B lymphocytes
J Samir
UNSW Sydney, 2023
2023
The functional and molecular determinants of HCV-specific CD8 T cell responses during early infection
C Cai, J Samir, T Adikari, T Peters, F Luciani
The Journal of Immunology 208 (1_Supplement), 169.12-169.12, 2022
2022
CAR+ and CAR- T cells differentiate into an NK-like subset that is associated with increased inflammatory cytokines following infusion
RHY Louie, C Cai, M Singh, I Deveson, J Ferguson, TG Amos, ...
medRxiv, 2022.03. 29.22273013, 2022
2022
Single cell multi-omics reveals early elevated function and multiple fates within human progenitor exhausted CD8+ T cells
C Cai, J Samir, MR Pirozyan, TN Adikari, M Gupta, P Leung, B Hughes, ...
bioRxiv, 2021.09. 09.459584, 2021
2021
Exploring and analysing immune single cell multi-omics data with VDJView
J Samir, S Rizzetto, M Gupta, F Luciani
bioRxiv, 613083, 2019
2019
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論文 1–19