Akira R. Kinjo
Akira R. Kinjo
Department of Mathematics, Universiti Brunei Darussalam
Verified email at ubd.edu.bn
TitleCited byYear
Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation
Y Minezaki, K Homma, AR Kinjo, K Nishikawa
Journal of molecular biology 359 (4), 1137-1149, 2006
1842006
Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format
AR Kinjo, H Suzuki, R Yamashita, Y Ikegawa, T Kudou, R Igarashi, ...
Nucleic acids research 40 (Database issue), D453, 2012
1132012
Predicting absolute contact numbers of native protein structure from amino acid sequence
AR Kinjo, K Horimoto, K Nishikawa
Proteins: Structure, Function, and Bioinformatics 58 (1), 158-165, 2005
722005
Comprehensive structural classification of ligand-binding motifs in proteins
AR Kinjo, H Nakamura
Structure 17 (2), 234-246, 2009
472009
Competition between protein folding and aggregation with molecular chaperones in crowded solutions: insight from mesoscopic simulations
AR Kinjo, S Takada
Biophysical journal 85 (6), 3521-3531, 2003
442003
Protein structure databases with new web services for structural biology and biomedical research
DM Standley, AR Kinjo, K Kinoshita, H Nakamura
Briefings in bioinformatics 9 (4), 276-285, 2008
432008
Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: statics
AR Kinjo, S Takada
Physical Review E 66 (3), 031911, 2002
412002
Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures
AR Kinjo, GJ Bekker, H Suzuki, Y Tsuchiya, T Kawabata, Y Ikegawa, ...
Nucleic acids research, gkw962, 2016
402016
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows
T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ...
Journal of biomedical semantics 1 (1), 8, 2010
402010
Neuro-symbolic representation learning on biological knowledge graphs
M Alshahrani, MA Khan, O Maddouri, AR Kinjo, N Queralt-Rosinach, ...
Bioinformatics 33 (17), 2723-2730, 2017
372017
Recoverable one-dimensional encoding of three-dimensional protein structures
AR Kinjo, K Nishikawa
Bioinformatics 21 (10), 2167-2170, 2005
362005
Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: dynamics
AR Kinjo, S Takada
Physical Review E 66 (5), 051902, 2002
362002
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
T Katayama, MD Wilkinson, G Micklem, S Kawashima, A Yamaguchi, ...
Journal of biomedical semantics 4 (1), 6, 2013
352013
CRNPRED: highly accurate prediction of one-dimensional protein structures by large-scale critical random networks
AR Kinjo, K Nishikawa
BMC bioinformatics 7 (1), 401, 2006
322006
Eigenvalue analysis of amino acid substitution matrices reveals a sharp transition of the mode of sequence conservation in proteins
AR Kinjo, K Nishikawa
Bioinformatics 20 (16), 2504-2508, 2004
272004
Similarity search for local protein structures at atomic resolution by exploiting a database management system
AR Kinjo, H Nakamura
Biophysics 3, 75-84, 2007
262007
Molmil: a molecular viewer for the PDB and beyond
GJ Bekker, H Nakamura, AR Kinjo
Journal of cheminformatics 8 (1), 42, 2016
242016
Predicting secondary structures, contact numbers, and residue-wise contact orders of native protein structures from amino acid sequences using critical random networks
AR Kinjo, K Nishikawa
Biophysics 1, 67-74, 2005
212005
Cooperative approach for the protein fold recognition
M Ota, T Kawabata, AR Kinjo, K Nishikawa
Proteins: Structure, Function, and Bioinformatics 37 (S3), 126-132, 1999
211999
Wang-Landau molecular dynamics technique to search for low-energy conformational space of proteins
T Nagasima, AR Kinjo, T Mitsui, K Nishikawa
Physical Review E 75 (6), 066706, 2007
202007
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Articles 1–20