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Akira R. Kinjo
Akira R. Kinjo
Department of Mathematics, Universiti Brunei Darussalam
Verified email at ubd.edu.bn
Title
Cited by
Cited by
Year
Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation
Y Minezaki, K Homma, AR Kinjo, K Nishikawa
Journal of molecular biology 359 (4), 1137-1149, 2006
2292006
Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format
AR Kinjo, H Suzuki, R Yamashita, Y Ikegawa, T Kudou, R Igarashi, ...
Nucleic acids research 40 (D1), D453-D460, 2012
1352012
Neuro-symbolic representation learning on biological knowledge graphs
M Alshahrani, MA Khan, O Maddouri, AR Kinjo, N Queralt-Rosinach, ...
Bioinformatics 33 (17), 2723-2730, 2017
1092017
Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures
AR Kinjo, GJ Bekker, H Suzuki, Y Tsuchiya, T Kawabata, Y Ikegawa, ...
Nucleic Acids Research, gkw962, 2016
982016
Predicting absolute contact numbers of native protein structure from amino acid sequence
AR Kinjo, K Horimoto, K Nishikawa
Proteins: Structure, Function, and Bioinformatics 58 (1), 158-165, 2005
792005
New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)
AR Kinjo, GJ Bekker, H Wako, S Endo, Y Tsuchiya, H Sato, H Nishi, ...
Protein Science 27 (1), 95-102, 2018
562018
Molmil: a molecular viewer for the PDB and beyond
GJ Bekker, H Nakamura, AR Kinjo
Journal of Cheminformatics 8 (1), 1-5, 2016
542016
Comprehensive structural classification of ligand-binding motifs in proteins
AR Kinjo, H Nakamura
Structure 17 (2), 234-246, 2009
522009
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows
T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ...
Journal of biomedical semantics 1 (1), 1-19, 2010
492010
Competition between protein folding and aggregation with molecular chaperones in crowded solutions: insight from mesoscopic simulations
AR Kinjo, S Takada
Biophysical journal 85 (6), 3521-3531, 2003
472003
Protein structure databases with new web services for structural biology and biomedical research
DM Standley, AR Kinjo, K Kinoshita, H Nakamura
Briefings in bioinformatics 9 (4), 276-285, 2008
462008
Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: statics
AR Kinjo, S Takada
Physical Review E 66 (3), 031911, 2002
462002
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
T Katayama, MD Wilkinson, G Micklem, S Kawashima, A Yamaguchi, ...
Journal of biomedical semantics 4 (1), 1-17, 2013
442013
Recoverable one-dimensional encoding of three-dimensional protein structures
AR Kinjo, K Nishikawa
Bioinformatics 21 (10), 2167-2170, 2005
382005
Eigenvalue analysis of amino acid substitution matrices reveals a sharp transition of the mode of sequence conservation in proteins
AR Kinjo, K Nishikawa
Bioinformatics 20 (16), 2504-2508, 2004
372004
Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: dynamics
AR Kinjo, S Takada
Physical Review E 66 (5), 051902, 2002
372002
CRNPRED: highly accurate prediction of one-dimensional protein structures by large-scale critical random networks
AR Kinjo, K Nishikawa
BMC bioinformatics 7 (1), 1-8, 2006
362006
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications
T Katayama, MD Wilkinson, R Vos, T Kawashima, S Kawashima, ...
Journal of biomedical semantics 2 (1), 1-18, 2011
262011
Similarity search for local protein structures at atomic resolution by exploiting a database management system
AR Kinjo, H Nakamura
Biophysics 3, 75-84, 2007
262007
Mechanism of evolution by genetic assimilation: Equivalence and independence of genetic mutation and epigenetic modulation in phenotypic expression.
K Nishikawa, AR Kinjo
Biophysical Reviews 10 (2), 667–676, 2018
232018
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Articles 1–20