| Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation Y Minezaki, K Homma, AR Kinjo, K Nishikawa Journal of molecular biology 359 (4), 1137-1149, 2006 | 190 | 2006 |
| Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format AR Kinjo, H Suzuki, R Yamashita, Y Ikegawa, T Kudou, R Igarashi, ... Nucleic acids research 40 (D1), D453-D460, 2012 | 117 | 2012 |
| Predicting absolute contact numbers of native protein structure from amino acid sequence AR Kinjo, K Horimoto, K Nishikawa Proteins: Structure, Function, and Bioinformatics 58 (1), 158-165, 2005 | 76 | 2005 |
| Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures AR Kinjo, GJ Bekker, H Suzuki, Y Tsuchiya, T Kawabata, Y Ikegawa, ... Nucleic acids research, gkw962, 2016 | 49 | 2016 |
| Comprehensive structural classification of ligand-binding motifs in proteins AR Kinjo, H Nakamura Structure 17 (2), 234-246, 2009 | 47 | 2009 |
| Competition between protein folding and aggregation with molecular chaperones in crowded solutions: insight from mesoscopic simulations AR Kinjo, S Takada Biophysical journal 85 (6), 3521-3531, 2003 | 46 | 2003 |
| The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ... Journal of biomedical semantics 1 (1), 8, 2010 | 43 | 2010 |
| Protein structure databases with new web services for structural biology and biomedical research DM Standley, AR Kinjo, K Kinoshita, H Nakamura Briefings in bioinformatics 9 (4), 276-285, 2008 | 43 | 2008 |
| Neuro-symbolic representation learning on biological knowledge graphs M Alshahrani, MA Khan, O Maddouri, AR Kinjo, N Queralt-Rosinach, ... Bioinformatics 33 (17), 2723-2730, 2017 | 42 | 2017 |
| Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: statics AR Kinjo, S Takada Physical Review E 66 (3), 031911, 2002 | 40 | 2002 |
| The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies T Katayama, MD Wilkinson, G Micklem, S Kawashima, A Yamaguchi, ... Journal of biomedical semantics 4 (1), 6, 2013 | 39 | 2013 |
| Recoverable one-dimensional encoding of three-dimensional protein structures AR Kinjo, K Nishikawa Bioinformatics 21 (10), 2167-2170, 2005 | 37 | 2005 |
| Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: dynamics AR Kinjo, S Takada Physical Review E 66 (5), 051902, 2002 | 36 | 2002 |
| CRNPRED: highly accurate prediction of one-dimensional protein structures by large-scale critical random networks AR Kinjo, K Nishikawa BMC bioinformatics 7 (1), 401, 2006 | 32 | 2006 |
| Molmil: a molecular viewer for the PDB and beyond GJ Bekker, H Nakamura, AR Kinjo Journal of cheminformatics 8 (1), 1-5, 2016 | 27 | 2016 |
| Eigenvalue analysis of amino acid substitution matrices reveals a sharp transition of the mode of sequence conservation in proteins AR Kinjo, K Nishikawa Bioinformatics 20 (16), 2504-2508, 2004 | 27 | 2004 |
| Similarity search for local protein structures at atomic resolution by exploiting a database management system AR Kinjo, H Nakamura Biophysics 3, 75-84, 2007 | 26 | 2007 |
| Wang-Landau molecular dynamics technique to search for low-energy conformational space of proteins T Nagasima, AR Kinjo, T Mitsui, K Nishikawa Physical Review E 75 (6), 066706, 2007 | 22 | 2007 |
| Predicting secondary structures, contact numbers, and residue-wise contact orders of native protein structures from amino acid sequences using critical random networks AR Kinjo, K Nishikawa Biophysics 1, 67-74, 2005 | 22 | 2005 |
| The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications T Katayama, MD Wilkinson, R Vos, T Kawashima, S Kawashima, ... Journal of biomedical semantics 2 (1), 4, 2011 | 21 | 2011 |
Nakamura Haruki大阪大学蛋白質研究所Verified email at protein.osaka-u.ac.jp
