Hideo Matsuda
Hideo Matsuda
Graduate School of Information Science and Technology, Osaka University
確認したメール アドレス: ist.osaka-u.ac.jp - ホームページ
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
science 309 (5740), 1559-1563, 2005
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, ...
Nature 420 (6915), 563-573, 2002
fastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
GJ Olsen, H Matsuda, R Hagstrom, R Overbeek
Bioinformatics 10 (1), 41-48, 1994
Functional annotation of a full-length mouse cDNA collection
RIKEN Genome Exploration Research Group Phase II Team, ...
Nature 409 (6821), 685, 2001
Diagnostic assessment of deep learning algorithms for detection of lymph node metastases in women with breast cancer
BE Bejnordi, M Veta, PJ Van Diest, B Van Ginneken, N Karssemeijer, ...
Jama 318 (22), 2199-2210, 2017
Biased biological functions of horizontally transferred genes in prokaryotic genomes
Y Nakamura, T Itoh, H Matsuda, T Gojobori
Nature genetics 36 (7), 760-766, 2004
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
H Suzuki, ARR Forrest, E Van Nimwegen, CO Daub, PJ Balwierz, ...
Nature genetics 41 (5), 553, 2009
Integrative annotation of 21,037 human genes validated by full-length cDNA clones
T Imanishi, T Itoh, Y Suzuki, C O'donovan, S Fukuchi, KO Koyanagi, ...
PLoS biology 2 (6), 2004
A multiple alignment algorithm for metabolic pathway analysis using enzyme hierarchy.
Y Tohsato, H Matsuda, A Hashimoto
ISMB 8, 376-383, 2000
Classifying molecular sequences using a linkage graph with their pairwise similarities
H Matsuda, T Ishihara, A Hashimoto
Theoretical Computer Science 210 (2), 305-325, 1999
Mouse proteome analysis
A Kanapin, S Batalov, MJ Davis, J Gough, S Grimmond, H Kawaji, ...
Genome research 13 (6b), 1335-1344, 2003
Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping
W Fujibuchi, H Ogata, H Matsuda, M Kanehisa
Nucleic acids research 28 (20), 4029-4036, 2000
Protein phylogenetic inference using maximum likelihood with a genetic algorithm
H Matsuda
Pacific symposium on biocomputing 96, 512-523, 1996
PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB)
T Noguchi, H Matsuda, Y Akiyama
Nucleic acids research 29 (1), 219-220, 2001
Graph-based clustering for finding distant relationships in a large set of protein sequences
H Kawaji, Y Takenaka, H Matsuda
Bioinformatics 20 (2), 243-252, 2004
FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I & II Team. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
Y Okazaki, M Furuno, T Kasukawa
NATURE 420, 563-573, 2002
A graph-based clustering method for a large set of sequences using a graph partitioning algorithm
H Kawaji, Y Yamaguchi, H Matsuda, A Hashimoto
Genome Informatics 12, 93-102, 2001
Development and evaluation of an automated annotation pipeline and cDNA annotation system
T Kasukawa, M Furuno, I Nikaido, H Bono, DA Hume, C Bult, DP Hill, ...
Genome Research 13 (6b), 1542-1551, 2003
Direct cell–cell contact between mature osteoblasts and osteoclasts dynamically controls their functions in vivo
M Furuya, J Kikuta, S Fujimori, S Seno, H Maeda, M Shirazaki, M Uenaka, ...
Nature communications 9 (1), 1-12, 2018
Proinflammatory cytokine interleukin-1β suppresses cold-induced thermogenesis in adipocytes
T Goto, S Naknukool, R Yoshitake, Y Hanafusa, S Tokiwa, Y Li, ...
Cytokine 77, 107-114, 2016
論文 1–20