Hideo Matsuda
Hideo Matsuda
Graduate School of Information Science and Technology, Osaka University
Verified email at ist.osaka-u.ac.jp - Homepage
Cited by
Cited by
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
science 309 (5740), 1559-1563, 2005
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, ...
Nature 420 (6915), 563-573, 2002
fastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
GJ Olsen, H Matsuda, R Hagstrom, R Overbeek
Bioinformatics 10 (1), 41-48, 1994
Diagnostic assessment of deep learning algorithms for detection of lymph node metastases in women with breast cancer
BE Bejnordi, M Veta, PJ Van Diest, B Van Ginneken, N Karssemeijer, ...
Jama 318 (22), 2199-2210, 2017
Functional annotation of a full-length mouse cDNA collection
J Kawai, A Shinagawa, K Shibata, M Yoshino, M Itoh, Y Ishii, T Arakawa, ...
Nature 409 (6821), 685-689, 2001
Biased biological functions of horizontally transferred genes in prokaryotic genomes
Y Nakamura, T Itoh, H Matsuda, T Gojobori
Nature genetics 36 (7), 760-766, 2004
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
H Suzuki, ARR Forrest, E Van Nimwegen, CO Daub, PJ Balwierz, ...
Nature genetics 41 (5), 553, 2009
Integrative annotation of 21,037 human genes validated by full-length cDNA clones
T Imanishi, T Itoh, Y Suzuki, C O'donovan, S Fukuchi, KO Koyanagi, ...
PLoS Biol 2 (6), e162, 2004
A Multiple Alignment Algorithm for Metabolic Pathway Analysis Using Enzyme Hierarchy.
Y Tohsato, H Matsuda, A Hashimoto
ISMB 8, 376-383, 2000
Classifying molecular sequences using a linkage graph with their pairwise similarities
H Matsuda, T Ishihara, A Hashimoto
Theoretical Computer Science 210 (2), 305-325, 1999
Mouse proteome analysis
A Kanapin, S Batalov, MJ Davis, J Gough, S Grimmond, H Kawaji, ...
Genome research 13 (6b), 1335-1344, 2003
Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping
W Fujibuchi, H Ogata, H Matsuda, M Kanehisa
Nucleic acids research 28 (20), 4029-4036, 2000
Protein phylogenetic inference using maximum likelihood with a genetic algorithm
H Matsuda
Pacific symposium on biocomputing 96, 512-523, 1996
PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB)
T Noguchi, H Matsuda, Y Akiyama
Nucleic Acids Research 29 (1), 219-220, 2001
Direct cell–cell contact between mature osteoblasts and osteoclasts dynamically controls their functions in vivo
M Furuya, J Kikuta, S Fujimori, S Seno, H Maeda, M Shirazaki, M Uenaka, ...
Nature communications 9 (1), 1-12, 2018
Graph-based clustering for finding distant relationships in a large set of protein sequences
H Kawaji, Y Takenaka, H Matsuda
Bioinformatics 20 (2), 243-252, 2004
Proinflammatory cytokine interleukin-1β suppresses cold-induced thermogenesis in adipocytes
T Goto, S Naknukool, R Yoshitake, Y Hanafusa, S Tokiwa, Y Li, ...
Cytokine 77, 107-114, 2016
A graph-based clustering method for a large set of sequences using a graph partitioning algorithm
H Kawaji, Y Yamaguchi, H Matsuda, A Hashimoto
Genome Informatics 12, 93-102, 2001
Development and evaluation of an automated annotation pipeline and cDNA annotation system
T Kasukawa, M Furuno, I Nikaido, H Bono, DA Hume, C Bult, DP Hill, ...
Genome Research 13 (6b), 1542-1551, 2003
Gene expression profile prospectively predicts peritoneal relapse after curative surgery of gastric cancer
A Takeno, I Takemasa, S Seno, M Yamasaki, M Motoori, H Miyata, ...
Annals of surgical oncology 17 (4), 1033-1042, 2010
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