|The transcriptional landscape of the mammalian genome|
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
science 309 (5740), 1559-1563, 2005
|Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs|
Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, ...
Nature 420 (6915), 563-573, 2002
|fastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood|
GJ Olsen, H Matsuda, R Hagstrom, R Overbeek
Bioinformatics 10 (1), 41-48, 1994
|Diagnostic assessment of deep learning algorithms for detection of lymph node metastases in women with breast cancer|
BE Bejnordi, M Veta, PJ Van Diest, B Van Ginneken, N Karssemeijer, ...
Jama 318 (22), 2199-2210, 2017
|Functional annotation of a full-length mouse cDNA collection|
J Kawai, A Shinagawa, K Shibata, M Yoshino, M Itoh, Y Ishii, T Arakawa, ...
Nature 409 (6821), 685-689, 2001
|Biased biological functions of horizontally transferred genes in prokaryotic genomes|
Y Nakamura, T Itoh, H Matsuda, T Gojobori
Nature genetics 36 (7), 760-766, 2004
|The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line|
H Suzuki, ARR Forrest, E Van Nimwegen, CO Daub, PJ Balwierz, ...
Nature genetics 41 (5), 553, 2009
|Integrative annotation of 21,037 human genes validated by full-length cDNA clones|
T Imanishi, T Itoh, Y Suzuki, C O'donovan, S Fukuchi, KO Koyanagi, ...
PLoS Biol 2 (6), e162, 2004
|A Multiple Alignment Algorithm for Metabolic Pathway Analysis Using Enzyme Hierarchy.|
Y Tohsato, H Matsuda, A Hashimoto
ISMB 8, 376-383, 2000
|Classifying molecular sequences using a linkage graph with their pairwise similarities|
H Matsuda, T Ishihara, A Hashimoto
Theoretical Computer Science 210 (2), 305-325, 1999
|Mouse proteome analysis|
A Kanapin, S Batalov, MJ Davis, J Gough, S Grimmond, H Kawaji, ...
Genome research 13 (6b), 1335-1344, 2003
|Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping|
W Fujibuchi, H Ogata, H Matsuda, M Kanehisa
Nucleic acids research 28 (20), 4029-4036, 2000
|Protein phylogenetic inference using maximum likelihood with a genetic algorithm|
Pacific symposium on biocomputing 96, 512-523, 1996
|PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB)|
T Noguchi, H Matsuda, Y Akiyama
Nucleic Acids Research 29 (1), 219-220, 2001
|Direct cell–cell contact between mature osteoblasts and osteoclasts dynamically controls their functions in vivo|
M Furuya, J Kikuta, S Fujimori, S Seno, H Maeda, M Shirazaki, M Uenaka, ...
Nature communications 9 (1), 1-12, 2018
|Graph-based clustering for finding distant relationships in a large set of protein sequences|
H Kawaji, Y Takenaka, H Matsuda
Bioinformatics 20 (2), 243-252, 2004
|Proinflammatory cytokine interleukin-1β suppresses cold-induced thermogenesis in adipocytes|
T Goto, S Naknukool, R Yoshitake, Y Hanafusa, S Tokiwa, Y Li, ...
Cytokine 77, 107-114, 2016
|A graph-based clustering method for a large set of sequences using a graph partitioning algorithm|
H Kawaji, Y Yamaguchi, H Matsuda, A Hashimoto
Genome Informatics 12, 93-102, 2001
|Development and evaluation of an automated annotation pipeline and cDNA annotation system|
T Kasukawa, M Furuno, I Nikaido, H Bono, DA Hume, C Bult, DP Hill, ...
Genome Research 13 (6b), 1542-1551, 2003
|Gene expression profile prospectively predicts peritoneal relapse after curative surgery of gastric cancer|
A Takeno, I Takemasa, S Seno, M Yamasaki, M Motoori, H Miyata, ...
Annals of surgical oncology 17 (4), 1033-1042, 2010