Tiago Chedraoui Silva
Tiago Chedraoui Silva
Verified email at med.miami.edu
Title
Cited by
Cited by
Year
Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma
M Ceccarelli, FP Barthel, TM Malta, TS Sabedot, SR Salama, BA Murray, ...
Cell 164 (3), 550-563, 2016
11822016
TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data
A Colaprico, TC Silva, C Olsen, L Garofano, C Cava, D Garolini, ...
Nucleic acids research 44 (8), e71-e71, 2016
9492016
The chromatin accessibility landscape of primary human cancers
MR Corces, JM Granja, S Shams, BH Louie, JA Seoane, W Zhou, ...
Science 362 (6413), 2018
3232018
New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx
M Mounir, M Lucchetta, TC Silva, C Olsen, G Bontempi, X Chen, ...
PLoS computational biology 15 (3), e1006701, 2019
922019
TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
TC Silva, A Colaprico, C Olsen, F D'Angelo, G Bontempi, M Ceccarelli, ...
F1000Research 5, 2016
862016
Glioma CpG island methylator phenotype (G-CIMP): biological and clinical implications
TM Malta, CF de Souza, TS Sabedot, TC Silva, MS Mosella, SN Kalkanis, ...
Neuro-oncology 20 (5), 608-620, 2018
772018
Identification of distinct mutational patterns and new driver genes in oesophageal squamous cell carcinomas and adenocarcinomas
DC Lin, HQ Dinh, JJ Xie, A Mayakonda, TC Silva, YY Jiang, LW Ding, ...
Gut 67 (10), 1769-1779, 2018
562018
Before and after: comparison of legacy and harmonized TCGA genomic data commons’ data
GF Gao, JS Parker, SM Reynolds, TC Silva, LB Wang, W Zhou, R Akbani, ...
Cell systems 9 (1), 24-34. e10, 2019
412019
SpidermiR: an R/bioconductor package for integrative analysis with miRNA data
C Cava, A Colaprico, G Bertoli, A Graudenzi, TC Silva, C Olsen, ...
International journal of molecular sciences 18 (2), 274, 2017
362017
ELMER v. 2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles
TC Silva, SG Coetzee, N Gull, L Yao, DJ Hazelett, H Noushmehr, DC Lin, ...
Bioinformatics 35 (11), 1974-1977, 2019
312019
Master transcription factors form interconnected circuitry and orchestrate transcriptional networks in oesophageal adenocarcinoma
L Chen, M Huang, J Plummer, J Pan, YY Jiang, Q Yang, TC Silva, N Gull, ...
Gut 69 (4), 630-640, 2020
212020
Interpreting pathways to discover cancer driver genes with Moonlight
A Colaprico, C Olsen, MH Bailey, GJ Odom, T Terkelsen, TC Silva, ...
Nature communications 11 (1), 1-17, 2020
132020
Lineage-specific epigenomic and genomic activation of oncogene HNF4A promotes gastrointestinal adenocarcinomas
J Pan, TC Silva, N Gull, Q Yang, JT Plummer, S Chen, K Daigo, ...
Cancer research 80 (13), 2722-2736, 2020
112020
GENAVi: a shiny web application for gene expression normalization, analysis and visualization
ALP Reyes, TC Silva, SG Coetzee, JT Plummer, BD Davis, S Chen, ...
BMC genomics 20 (1), 1-9, 2019
112019
TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data
TC Silva, A Colaprico, C Olsen, TM Malta, G Bontempi, M Ceccarelli, ...
F1000Research 7 (439), 439, 2018
102018
RNA-binding protein ZFP36L1 suppresses hypoxia and cell-cycle signaling
XY Loh, QY Sun, LW Ding, A Mayakonda, N Venkatachalam, MS Yeo, ...
Cancer research 80 (2), 219-233, 2020
92020
Epigenome-wide meta-analysis of DNA methylation differences in prefrontal cortex implicates the immune processes in Alzheimer’s disease
L Zhang, TC Silva, JI Young, L Gomez, MA Schmidt, KL Hamilton-Nelson, ...
Nature communications 11 (1), 1-13, 2020
72020
Moonlight: a tool for biological interpretation and driver genes discovery
A Colaprico, C Olsen, C Cava, T Terkelsen, TC Silva, A Olsen, L Cantini, ...
BioRxiv, 265322, 2018
52018
PathwayPCA: an R/Bioconductor Package for Pathway Based Integrative Analysis of Multi‐Omics Data
GJ Odom, Y Ban, A Colaprico, L Liu, TC Silva, X Sun, AR Pico, B Zhang, ...
Proteomics 20 (21-22), 1900409, 2020
32020
DNA Methylation-based Signatures Classify Sporadic Pituitary Tumors According to Clinicopathological Features.
MS Mosella, TS Sabedot, TC Silva, TM Malta, FD Segato, KP Asmaro, ...
bioRxiv, 2020
12020
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