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William S Chen
William S Chen
Verified email at ucsf.edu
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Cited by
Year
Visualizing structure and transitions in high-dimensional biological data
KR Moon, D van Dijk, Z Wang, S Gigante, DB Burkhardt, WS Chen, K Yim, ...
Nature Biotechnology 37 (12), 1482-1492, 2019
7772019
Exploring single-cell data with deep multitasking neural networks
M Amodio, D Van Dijk, K Srinivasan, WS Chen, H Mohsen, KR Moon, ...
Nature methods 16 (11), 1139-1145, 2019
2862019
The DNA methylation landscape of advanced prostate cancer
SG Zhao, WS Chen, H Li, A Foye, M Zhang, M Sjöström, R Aggarwal, ...
Nature Genetics 52 (8), 778-789, 2020
2452020
Global Absence and Targeting of Protective Immune States in Severe COVID-19.
AJ Combes, T Courau, NF Kuhn, KH Hu, A Ray, WS Chen, SJ Clearly, ...
Nature, 2020
2412020
Genomic drivers of poor prognosis and enzalutamide resistance in metastatic castration-resistant prostate cancer
WS Chen, R Aggarwal, L Zhang, SG Zhao, GV Thomas, TM Beer, ...
European urology 76 (5), 562-571, 2019
1322019
Automated detection of off-label drug use
K Jung, P LePendu, WS Chen, SV Iyer, B Readhead, JT Dudley, NH Shah
PloS one 9 (2), e89324, 2014
762014
Epidemiology of nonfatal bicycle injuries presenting to United States emergency departments, 2001–2008
WS Chen, RY Dunn, AJ Chen, JG Linakis
Academic emergency medicine 20 (6), 570-575, 2013
722013
Clinical and genomic implications of luminal and basal subtypes across carcinomas
SG Zhao, WS Chen, R Das, SL Chang, SA Tomlins, J Chou, DA Quigley, ...
Clinical Cancer Research 25 (8), 2450-2457, 2019
602019
Novel RB1-loss transcriptomic signature is associated with poor clinical outcomes across cancer types
WS Chen, M Alshalalfa, SG Zhao, Y Liu, BA Mahal, DA Quigley, T Wei, ...
Clinical Cancer Research 25 (14), 4290-4299, 2019
502019
Uncovering axes of variation among single-cell cancer specimens
WS Chen, N Zivanovic, D van Dijk, G Wolf, B Bodenmiller, ...
Nature Methods 17 (3), 302-310, 2020
452020
CDKN2A copy number loss is an independent prognostic factor in HPV-negative head and neck squamous cell carcinoma
WS Chen, RS Bindra, A Mo, T Hayman, Z Husain, JN Contessa, ...
Frontiers in oncology 8, 95, 2018
442018
Diameter of solid tumor component alone should be used to establish T stage in lung adenocarcinoma
BM Burt, AN Leung, M Yanagawa, W Chen, SS Groth, CD Hoang, VS Nair, ...
Annals of surgical oncology 22 (3), 1318-1323, 2015
342015
The 5-hydroxymethylcytosine landscape of prostate cancer
M Sjöström, SG Zhao, S Levy, M Zhang, Y Ning, R Shrestha, A Lundberg, ...
Cancer Research 82 (21), 3888-3902, 2022
292022
An integrated functional and clinical genomics approach reveals genes driving aggressive metastatic prostate cancer
R Das, M Sjöström, R Shrestha, C Yogodzinski, EA Egusa, LN Chesner, ...
Nature Communications 12 (1), 4601, 2021
252021
Synergistic drug combinations from electronic health records and gene expression
YS Low, AC Daugherty, EA Schroeder, W Chen, T Seto, S Weber, M Lim, ...
Journal of the American Medical Informatics Association 24 (3), 565-576, 2017
182017
Transcriptomic and clinical characterization of neuropeptide Y expression in localized and metastatic prostate cancer: identification of novel prostate cancer subtype with …
M Alshalalfa, PL Nguyen, H Beltran, WS Chen, E Davicioni, SG Zhao, ...
European urology oncology 2 (4), 405-412, 2019
172019
Genomic and clinical characterization of stromal infiltration markers in prostate cancer
BA Mahal, M Alshalalfa, SG Zhao, H Beltran, WS Chen, F Chipidza, ...
Cancer 126 (7), 1407-1412, 2020
132020
Autoantibody landscape in patients with advanced prostate cancer
WS Chen, WA Haynes, R Waitz, K Kamath, A Vega-Crespo, R Shrestha, ...
Clinical Cancer Research 26 (23), 6204-6214, 2020
122020
Germline polymorphisms associated with impaired survival outcomes and somatic tumor alterations in advanced prostate cancer
WS Chen, EL Feng, R Aggarwal, A Foye, TM Beer, JJ Alumkal, M Gleave, ...
Prostate Cancer and Prostatic Diseases 23 (2), 316-323, 2020
122020
Copy number loss of 17q22 is associated with enzalutamide resistance and poor prognosis in metastatic castration-resistant prostate cancer
X Guan, D Sun, E Lu, JA Urrutia, RE Reiter, M Rettig, CP Evans, P Lara Jr, ...
Clinical Cancer Research 26 (17), 4616-4624, 2020
102020
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