Chromatographic alignment of ESI-LC-MS proteomics data sets by ordered bijective interpolated warping JT Prince, EM Marcotte Analytical chemistry 78 (17), 6140-6152, 2006 | 283 | 2006 |
The need for a public proteomics repository JT Prince, MW Carlson, R Wang, P Lu, EM Marcotte Nature biotechnology 22 (4), 471-472, 2004 | 212 | 2004 |
LC-MS alignment in theory and practice: a comprehensive algorithmic review R Smith, D Ventura, JT Prince Briefings in bioinformatics 16 (1), 104-117, 2015 | 162 | 2015 |
Metabolic-stress-induced rearrangement of the 14-3-3ζ interactome promotes autophagy via a ULK1-and AMPK-regulated 14-3-3ζ interaction with phosphorylated Atg9 VK Weerasekara, DJ Panek, DG Broadbent, JB Mortenson, AD Mathis, ... Molecular and cellular biology 34 (24), 4379-4388, 2014 | 127 | 2014 |
Proteomics, lipidomics, metabolomics: a mass spectrometry tutorial from a computer scientist's point of view R Smith, AD Mathis, D Ventura, JT Prince BMC bioinformatics 15, 1-14, 2014 | 100 | 2014 |
Mass spectrometry of the M. smegmatis proteome: protein expression levels correlate with function, operons, and codon bias R Wang, JT Prince, EM Marcotte Genome research 15 (8), 1118-1126, 2005 | 93 | 2005 |
Integrating shotgun proteomics and mRNA expression data to improve protein identification SR Ramakrishnan, C Vogel, JT Prince, R Wang, Z Li, LO Penalva, ... Bioinformatics 25 (11), 1397-1403, 2009 | 89 | 2009 |
Mitochondrial fission mediates ceramide-induced metabolic disruption in skeletal muscle ME Smith, TS Tippetts, ES Brassfield, BJ Tucker, A Ockey, AC Swensen, ... Biochemical Journal 456 (3), 427-439, 2013 | 88 | 2013 |
Resilient and connected landscapes for terrestrial conservation MG Anderson, A Barnett, M Clark, J Prince, A Olivero Sheldon, B Vickery The Nature Conservancy, Eastern Conservation Science, Eastern Regional …, 2016 | 64 | 2016 |
Dynamical structure function identifiability conditions enabling signal structure reconstruction J Adebayo, T Southwick, V Chetty, E Yeung, Y Yuan, J Goncalves, ... 2012 IEEE 51st IEEE Conference on Decision and Control (CDC), 4635-4641, 2012 | 55 | 2012 |
A fast coarse filtering method for peptide identification by mass spectrometry SR Ramakrishnan, R Mao, AA Nakorchevskiy, JT Prince, WS Willard, ... Bioinformatics 22 (12), 1524-1531, 2006 | 54 | 2006 |
Structures of the Gβ-CCT and PhLP1–Gβ-CCT complexes reveal a mechanism for G-protein β-subunit folding and Gβγ dimer assembly RL Plimpton, J Cuéllar, CWJ Lai, T Aoba, A Makaju, S Franklin, AD Mathis, ... Proceedings of the National Academy of Sciences 112 (8), 2413-2418, 2015 | 53 | 2015 |
Massifquant: open-source Kalman filter-based XC-MS isotope trace feature detection CJ Conley, R Smith, RJO Torgrip, RM Taylor, R Tautenhahn, JT Prince Bioinformatics 30 (18), 2636-2643, 2014 | 53 | 2014 |
Sequence and structural characterization of great salt lake bacteriophage CW02, a member of the T7-like supergroup PS Shen, MJ Domek, E Sanz-García, A Makaju, RM Taylor, R Hoggan, ... Journal of virology 86 (15), 7907-7917, 2012 | 42 | 2012 |
Ceramides mediate cigarette smoke-induced metabolic disruption in mice MO Thatcher, TS Tippetts, MB Nelson, AC Swensen, DR Winden, ... American Journal of Physiology-Endocrinology and Metabolism 307 (10), E919-E927, 2014 | 40 | 2014 |
Programmed Cell Death Protein 5 Interacts with the Cytosolic Chaperonin Containing Tailless Complex Polypeptide 1 (CCT) to Regulate β-Tubulin Folding*♦ CM Tracy, AJ Gray, J Cuéllar, TS Shaw, AC Howlett, RM Taylor, JT Prince, ... Journal of Biological Chemistry 289 (7), 4490-4502, 2014 | 40 | 2014 |
Novel algorithms and the benefits of comparative validation R Smith, D Ventura, JT Prince Bioinformatics 29 (12), 1583-1585, 2013 | 39 | 2013 |
The genomes, proteomes, and structures of three novel phages that infect the Bacillus cereus group and carry putative virulence factors JH Grose, DM Belnap, JD Jensen, AD Mathis, JT Prince, BD Merrill, ... Journal of Virology 88 (20), 11846-11860, 2014 | 36 | 2014 |
AICAR inhibits ceramide biosynthesis in skeletal muscle KA Erickson, ME Smith, TS Anthonymuthu, MJ Evanson, ES Brassfield, ... Diabetology & Metabolic Syndrome 4 (1), 45, 2012 | 35 | 2012 |
Mspire-Simulator: LC-MS shotgun proteomic simulator for creating realistic gold standard data AB Noyce, R Smith, J Dalgleish, RM Taylor, KC Erb, N Okuda, JT Prince Journal of proteome research 12 (12), 5742-5749, 2013 | 32 | 2013 |