Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 196 | 2022 |
Challenges and recommendations to improve the installability and archival stability of omics computational tools S Mangul, T Mosqueiro, RJ Abdill, D Duong, K Mitchell, V Sarwal, B Hill, ... PLoS biology 17 (6), e3000333, 2019 | 86* | 2019 |
Recommendations to enhance rigor and reproducibility in biomedical research JJ Brito, J Li, JH Moore, CS Greene, NA Nogoy, LX Garmire, S Mangul GigaScience 9 (6), giaa056, 2020 | 55 | 2020 |
Benchmarking of computational error-correction methods for next-generation sequencing data K Mitchell, JJ Brito, I Mandric, Q Wu, S Knyazev, S Chang, LS Martin, ... Genome biology 21, 1-13, 2020 | 42 | 2020 |
Physical data warehouse design on NoSQL databases-OLAP query processing over HBase LC Scabora, JJ Brito, RR Ciferri, CD de Aguiar Ciferri International Conference on Enterprise Information Systems 2, 111-118, 2016 | 40 | 2016 |
Faster cloud star joins with reduced disk spill and network communication JJ Brito, T Mosqueiro, RR Ciferri, CD de Aguiar Ciferri Procedia Computer Science 80, 74-85, 2016 | 20 | 2016 |
Efficient processing of drill-across queries over geographic data warehouses JJ Brito, TLL Siqueira, VC Times, RR Ciferri, CD de Ciferri Data Warehousing and Knowledge Discovery: 13th International Conference …, 2011 | 11 | 2011 |
Efficient approximate query answering over sensor data with deterministic error guarantees J Brito, K Demirkaya, B Etienne, Y Katsis, C Lin, Y Papakonstantinou arXiv preprint arXiv:1707.01414, 2017 | 8 | 2017 |
Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing K Peng, TS Nowicki, K Campbell, M Vahed, D Peng, Y Meng, ... Briefings in Bioinformatics 24 (4), bbad220, 2023 | 7 | 2023 |
Corrigendum to: Recommendations to enhance rigor and reproducibility in biomedical research JJ Brito, J Li, JH Moore, CS Greene, NA Nogoy, LX Garmire, S Mangul Gigascience 9 (9), giaa103, 2020 | 5 | 2020 |
pyTCR: A comprehensive and scalable solution for TCR-Seq data analysis to facilitate reproducibility and rigor of immunogenomics research K Peng, J Moore, M Vahed, J Brito, G Kao, AM Burkhardt, H Alachkar, ... Frontiers in Immunology 13, 954078, 2022 | 3 | 2022 |
Plato: Approximate analytics over compressed time series with tight deterministic error guarantees E Boursier, JJ Brito, C Lin, Y Papakonstantinou CoRR, abs/1808.04876, 2018 | 3 | 2018 |
Seeing beyond the target: leveraging off-target reads in targeted clinical tumor sequencing to identify prognostic biomarkers S Mangul, JJ Brito, S Groha, N Zaitlen, A Gusev bioRxiv, 2021.05. 28.446240, 2021 | 2 | 2021 |
Random access with a distributed bitmap join index for star joins JJ Brito, T Mosqueiro, RR Ciferri, CDA Ciferri Heliyon 6 (2), 2020 | 2 | 2020 |
Telescope: an interactive tool for managing large-scale analysis from mobile devices JJ Brito, T Mosqueiro, J Rotman, V Xue, DJ Chapski, JD la Hoz, P Matias, ... GigaScience 9 (1), giz163, 2020 | 1 | 2020 |
Processamento de consultas SOLAP drill-across e com junção espacial em data warehouses geográficos JJ Brito Universidade de São Paulo, 2012 | 1 | 2012 |
Packaging and containerization of computational methods M Alser, B Lawlor, RJ Abdill, S Waymost, R Ayyala, N Rajkumar, ... Nature Protocols, 1-11, 2024 | | 2024 |
The DNA methylation landscape across the TCR loci genes in patients with acute myeloid leukemia M Pospiech, J Beckford, AM Kumar, M Tamizharasan, J Brito, G Liang, ... Cancer Research 84 (6_Supplement), 7011-7011, 2024 | | 2024 |
TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles V Sarwal, J Brito, S Mangul, D Koslicki GigaScience 12, giad008, 2023 | | 2023 |
Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities M Alser, S Waymost, R Ayyala, B Lawlor, RJ Abdill, N Rajkumar, ... arXiv preprint arXiv:2203.16261, 2022 | | 2022 |