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Mattia Zampieri
Mattia Zampieri
Professor at the Department of Biomedicine, University of Basel
Verified email at unibas.ch - Homepage
Title
Cited by
Cited by
Year
Multidimensional optimality of microbial metabolism
R Schuetz, N Zamboni, M Zampieri, M Heinemann, U Sauer
Science 336 (6081), 601-604, 2012
4952012
Frontiers of high-throughput metabolomics
M Zampieri, K Sekar, N Zamboni, U Sauer
Current opinion in chemical biology 36, 15-23, 2017
1792017
Nontargeted metabolomics reveals the multilevel response to antibiotic perturbations
M Zampieri, M Zimmermann, M Claassen, U Sauer
Cell reports 19 (6), 1214-1228, 2017
1542017
Metabolic constraints on the evolution of antibiotic resistance
M Zampieri, T Enke, V Chubukov, V Ricci, L Piddock, U Sauer
Molecular Systems Biology 13 (3), 917, 2017
1542017
Genomewide landscape of gene–metabolome associations in Escherichia coli
T Fuhrer, M Zampieri, DC Sévin, U Sauer, N Zamboni
Molecular Systems Biology 13 (1), 907, 2017
1302017
High-throughput metabolomic analysis predicts mode of action of uncharacterized antimicrobial compounds
M Zampieri, B Szappanos, MV Buchieri, A Trauner, I Piazza, P Picotti, ...
Science translational medicine 10 (429), eaal3973, 2018
1172018
Metabolic profiling of cancer cells reveals genome-wide crosstalk between transcriptional regulators and metabolism
K Ortmayr, S Dubuis, M Zampieri
Nature communications 10 (1), 1841, 2019
1152019
Regulatory mechanisms underlying coordination of amino acid and glucose catabolism in Escherichia coli
M Zampieri, M Hörl, F Hotz, NF Müller, U Sauer
Nature communications 10 (1), 3354, 2019
942019
Dynamic phosphoproteomics reveals TORC1-dependent regulation of yeast nucleotide and amino acid biosynthesis
AP Oliveira, C Ludwig, M Zampieri, H Weisser, R Aebersold, U Sauer
Science signaling 8 (374), rs4-rs4, 2015
712015
Metabolomics-driven exploration of the chemical drug space to predict combination antimicrobial therapies
AI Campos, M Zampieri
Molecular cell 74 (6), 1291-1303. e6, 2019
642019
Systematic analysis of transcriptional and post-transcriptional regulation of metabolism in yeast
E Gonçalves, Z Raguz Nakic, M Zampieri, O Wagih, D Ochoa, U Sauer, ...
PLoS computational biology 13 (1), e1005297, 2017
432017
Discerning static and causal interactions in genome-wide reverse engineering problems
M Zampieri, N Soranzo, C Altafini
Bioinformatics 24 (13), 1510-1515, 2008
422008
A framework for large-scale metabolome drug profiling links coenzyme A metabolism to the toxicity of anti-cancer drug dichloroacetate
S Dubuis, K Ortmayr, M Zampieri
Communications biology 1 (1), 101, 2018
402018
Large-scale functional analysis of the roles of phosphorylation in yeast metabolic pathways
JC Schulz, M Zampieri, S Wanka, C von Mering, U Sauer
Science signaling 7 (353), rs6-rs6, 2014
362014
A computational procedure to identify significant overlap of differentially expressed and genomic imbalanced regions in cancer datasets
S Bicciato, R Spinelli, M Zampieri, E Mangano, F Ferrari, L Beltrame, ...
Nucleic acids research 37 (15), 5057-5070, 2009
362009
Combining CRISPRi and metabolomics for functional annotation of compound libraries
M Anglada-Girotto, G Handschin, K Ortmayr, AI Campos, L Gillet, ...
Nature chemical biology 18 (5), 482-491, 2022
342022
Model-based integration of genomics and metabolomics reveals SNP functionality in Mycobacterium tuberculosis
O Øyås, S Borrell, A Trauner, M Zimmermann, J Feldmann, T Liphardt, ...
Proceedings of the National Academy of Sciences 117 (15), 8494-8502, 2020
322020
Predicting and characterizing selective multiple drug treatments for metabolicdiseases and cancer
G Facchetti, M Zampieri, C Altafini
BMC systems biology 6, 1-14, 2012
272012
Metabolomics-driven understanding of genotype-phenotype relations in model organisms
M Zampieri, U Sauer
Current Opinion in Systems Biology 6, 28-36, 2017
242017
Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis
QK Beg, M Zampieri, N Klitgord, SB Collins, C Altafini, MH Serres, ...
Nucleic acids research 40 (15), 7132-7149, 2012
242012
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Articles 1–20